STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_13465Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)    
Predicted Functional Partners:
SB4_13470
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
SB4_13475
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
SB4_13480
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
SB4_13460
Multidrug transporter; MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
SB4_13455
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.494
SB4_13450
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.492
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.455
SB4_16095
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.416
SB4_08995
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.414
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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