Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_14285Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology. (1165 aa)    
Predicted Functional Partners:
SB4_14280
Type IV secretion protein DotU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
SB4_14275
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
SB4_14295
Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.947
SB4_17760
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.942
SB4_17755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.912
SB4_14220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.890
SB4_17775
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.885
SB4_17740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.884
SB4_17765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.883
SB4_17770
Virulence protein SciE type; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.882
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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