Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SB4_14405Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)    
Predicted Functional Partners:
SB4_14390
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.980
SB4_14395
Peptidase U35; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.972
SB4_10610
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.936
SB4_14410
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.933
SB4_14400
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.872
SB4_14335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.859
SB4_10595
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.750
SB4_06970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.659
SB4_08905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
  
   0.638
SB4_06975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.626
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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