STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_14655Cobalamin biosynthesis protein CobS; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
SB4_14650
Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
SB4_14645
Arylsulfate sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
SB4_16875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.775
cobN
Cobalamin biosynthesis protein CobN; With CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.775
SB4_14665
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.655
SB4_15385
ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.639
atpF-2
ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.612
SB4_14775
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.572
SB4_09535
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.548
SB4_13255
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.548
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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