Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_14865Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)    
Predicted Functional Partners:
SB4_14860
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.872
SB4_14870
Adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.872
SB4_11690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
mtgA
Peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
     
 0.523
SB4_02750
ErfK/YbiS/YcfS/YnhG; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.504
smc
Chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.471
SB4_10935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
SB4_10940
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
SB4_10945
Protein-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
guaB
Inosine-5-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
  0.463
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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