Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_14895Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)    
Predicted Functional Partners:
SB4_08890
Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.826
SB4_06805
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.807
SB4_09120
Integrase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.638
SB4_03280
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.634
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
     
 0.609
SB4_01340
Glucose-1-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.593
SB4_14745
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.593
SB4_13915
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.572
SB4_01160
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.546
SB4_11530
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.546
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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