Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_15385ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
SB4_09540
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.
 
 
 0.940
SB4_14655
Cobalamin biosynthesis protein CobS; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.775
SB4_15390
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
SB4_14650
Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.760
SB4_13940
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.645
SB4_02480
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.609
SB4_08230
Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.609
SB4_13605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.609
SB4_16875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
  0.593
cobN
Cobalamin biosynthesis protein CobN; With CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.593
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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