Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_18210Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)    
Predicted Functional Partners:
SB4_18275
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.975
SB4_04275
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.
   
 0.877
SB4_08185
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.862
SB4_13015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.852
SB4_02060
DNA methylase N-4; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.842
SB4_02665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.802
SB4_18490
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.802
SB4_02870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.763
SB4_06695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.762
cobB
NAD-dependent deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily.
    
 0.762
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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