Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CNE65326.1 | YqiA | ERS008532_01829 | ERS008532_01831 | Putative cytoplasmic protein. | Esterase YqiA. | 0.688 |
CNE65326.1 | cpdA | ERS008532_01829 | ERS008532_01830 | Putative cytoplasmic protein. | Cyclic 3'%2C5'-adenosine monophosphate phosphodiesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.624 |
CNE65326.1 | dmlR_6 | ERS008532_01829 | ERS008532_01833 | Putative cytoplasmic protein. | LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | 0.491 |
CNE65326.1 | nfxD | ERS008532_01829 | ERS008532_01832 | Putative cytoplasmic protein. | DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.546 |
CNE65326.1 | nudF | ERS008532_01829 | ERS008532_01828 | Putative cytoplasmic protein. | ADP-ribose pyrophosphatase NudF. | 0.754 |
CNE65326.1 | tolC_1 | ERS008532_01829 | ERS008532_01827 | Putative cytoplasmic protein. | Outer membrane channel protein. | 0.506 |
CNF05805.1 | YqiA | ERS008532_02878 | ERS008532_01831 | Putative lipoprotein. | Esterase YqiA. | 0.428 |
CNF05805.1 | ftsN | ERS008532_02878 | ERS008532_03345 | Putative lipoprotein. | Cell division protein FtsN; Essential cell division protein that activates septal peptidoglycan synthesis and constriction of the cell. Acts on both sides of the membrane, via interaction with FtsA in the cytoplasm and interaction with the FtsQBL complex in the periplasm. These interactions may induce a conformational switch in both FtsA and FtsQBL, leading to septal peptidoglycan synthesis by FtsI and associated synthases. | 0.771 |
CNF05805.1 | helD | ERS008532_02878 | ERS008532_00239 | Putative lipoprotein. | DNA helicase IV. | 0.753 |
CNF05805.1 | msbB | ERS008532_02878 | ERS008532_00495 | Putative lipoprotein. | Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | 0.579 |
CNF05805.1 | tolC_1 | ERS008532_02878 | ERS008532_01827 | Putative lipoprotein. | Outer membrane channel protein. | 0.569 |
YqiA | CNE65326.1 | ERS008532_01831 | ERS008532_01829 | Esterase YqiA. | Putative cytoplasmic protein. | 0.688 |
YqiA | CNF05805.1 | ERS008532_01831 | ERS008532_02878 | Esterase YqiA. | Putative lipoprotein. | 0.428 |
YqiA | cpdA | ERS008532_01831 | ERS008532_01830 | Esterase YqiA. | Cyclic 3'%2C5'-adenosine monophosphate phosphodiesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.836 |
YqiA | dmlR_6 | ERS008532_01831 | ERS008532_01833 | Esterase YqiA. | LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | 0.655 |
YqiA | ftsN | ERS008532_01831 | ERS008532_03345 | Esterase YqiA. | Cell division protein FtsN; Essential cell division protein that activates septal peptidoglycan synthesis and constriction of the cell. Acts on both sides of the membrane, via interaction with FtsA in the cytoplasm and interaction with the FtsQBL complex in the periplasm. These interactions may induce a conformational switch in both FtsA and FtsQBL, leading to septal peptidoglycan synthesis by FtsI and associated synthases. | 0.412 |
YqiA | helD | ERS008532_01831 | ERS008532_00239 | Esterase YqiA. | DNA helicase IV. | 0.516 |
YqiA | msbB | ERS008532_01831 | ERS008532_00495 | Esterase YqiA. | Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | 0.539 |
YqiA | nfxD | ERS008532_01831 | ERS008532_01832 | Esterase YqiA. | DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.700 |
YqiA | nudF | ERS008532_01831 | ERS008532_01828 | Esterase YqiA. | ADP-ribose pyrophosphatase NudF. | 0.601 |
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