Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uspBUniversal stress protein UspB. (111 aa)    
Predicted Functional Partners:
tomB
Putative cytoplasmic protein.
  
   
 0.774
ycfL
Putative lipoprotein.
  
     0.773
CNE43829.1
Putative cell envelope opacity-associated protein A.
  
     0.763
pspG
Phage shock protein G.
  
     0.756
YbgE
Protein ybgE.
  
     0.756
tau
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.755
atpI
F0F1 ATP synthase subunit I.
  
     0.753
yecM
Protein yecM.
  
     0.725
flgM
Anti-sigma-28 factor FlgM.
  
     0.724
CNE86062.1
Putative cytoplasmic protein.
  
     0.711
Your Current Organism:
Yersinia mollaretii
NCBI taxonomy Id: 33060
Other names: ATCC 43969, CCUG 26331, CDC 2465-87, CIP 103324, CNY 7263, Y. mollaretii, Yersinia enterocolitica biogroup 3A, strain WAIP 204
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