STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAG84271.1Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)    
Predicted Functional Partners:
OAG90594.1
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.789
OAG84270.1
Glycerate dehydrogenase; Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.638
OAG84272.1
Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.563
rsmC
16S rRNA methyltransferase; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family.
       0.472
OAG84363.1
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.423
OAG90431.1
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.412
Your Current Organism:
Pseudomonas viridiflava
NCBI taxonomy Id: 33069
Other names: ATCC 13223, CECT 458, CFBP 2107, CIP 106699, DSM 11124, DSM 6694, ICMP 2848, LMG 2352, LMG:2352, NCPPB 635, NRRL B-895, P. viridiflava, Phytomonas viridiflava, Pseudomonas sp. 286, Pseudomonas syringae group genomosp. 6
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