STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKO52445.1C4-dicarboxylate ABC transporter substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (356 aa)    
Predicted Functional Partners:
AKO52443.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.906
AKO52444.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.905
AKO51067.1
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.784
AKO51335.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.784
AKO53827.1
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.784
AKO54090.1
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.784
AKO53594.1
TRAP dicarboxylate transporter subunit DctM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.779
AKO51269.1
TRAP dicarboxylate transporter subunit DctM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.777
AKO53826.1
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.777
AKO52802.1
TRAP dicarboxylate transporter subunit DctM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.776
Your Current Organism:
Marinobacter psychrophilus
NCBI taxonomy Id: 330734
Other names: CGMCC 1.6499, JCM 14643, M. psychrophilus, Marinobacter psychrophilus Zhang et al. 2008, Marinobacter sp. BSi20041, strain 20041
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