Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Saci_2154 | cisY | Saci_2154 | Saci_0243 | NAD-dependent malic enzyme. | Citrate synthase. | 0.932 |
Saci_2154 | fumC | Saci_2154 | Saci_0122 | NAD-dependent malic enzyme. | Fumarate hydratase class II. | 0.950 |
Saci_2154 | gap | Saci_2154 | Saci_1356 | NAD-dependent malic enzyme. | Glyceraldehyde-3-phosphate dehydrogenase. | 0.561 |
Saci_2154 | mas | Saci_2154 | Saci_2190 | NAD-dependent malic enzyme. | Malate synthase. | 0.920 |
Saci_2154 | mdh | Saci_2154 | Saci_0246 | NAD-dependent malic enzyme. | Lactate/malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. | 0.958 |
Saci_2154 | pckG | Saci_2154 | Saci_1100 | NAD-dependent malic enzyme. | Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle. | 0.808 |
Saci_2154 | sdhA | Saci_2154 | Saci_0982 | NAD-dependent malic enzyme. | Succinate dehydrogenase subunit A. | 0.522 |
aspB | cisY | Saci_1428 | Saci_0243 | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Citrate synthase. | 0.911 |
aspB | fumC | Saci_1428 | Saci_0122 | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Fumarate hydratase class II. | 0.851 |
aspB | gap | Saci_1428 | Saci_1356 | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Glyceraldehyde-3-phosphate dehydrogenase. | 0.472 |
aspB | icd | Saci_1428 | Saci_2375 | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Isocitrate dehydrogenase. | 0.892 |
aspB | mdh | Saci_1428 | Saci_0246 | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Lactate/malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. | 0.940 |
aspB | pckG | Saci_1428 | Saci_1100 | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle. | 0.857 |
aspB | sdhA | Saci_1428 | Saci_0982 | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | Succinate dehydrogenase subunit A. | 0.849 |
cisY | Saci_2154 | Saci_0243 | Saci_2154 | Citrate synthase. | NAD-dependent malic enzyme. | 0.932 |
cisY | aspB | Saci_0243 | Saci_1428 | Citrate synthase. | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | 0.911 |
cisY | fumC | Saci_0243 | Saci_0122 | Citrate synthase. | Fumarate hydratase class II. | 0.957 |
cisY | gap | Saci_0243 | Saci_1356 | Citrate synthase. | Glyceraldehyde-3-phosphate dehydrogenase. | 0.774 |
cisY | icd | Saci_0243 | Saci_2375 | Citrate synthase. | Isocitrate dehydrogenase. | 0.997 |
cisY | mas | Saci_0243 | Saci_2190 | Citrate synthase. | Malate synthase. | 0.983 |
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