STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saci_0731Conserved Archaeal protein. (83 aa)    
Predicted Functional Partners:
Saci_0732
Conserved Archaeal protein.
 
     0.742
Saci_0944
Conserved Archaeal protein; Similar to gi:15920753.
  
   
 0.716
Saci_0730
Conserved Archaeal protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family.
       0.714
lysM
Lrp-like transcriptional regulator.
 
 
 
 0.530
Saci_1289
Conserved Archaeal protein; Operon conserved in 3 sulfolobes - two genes involved with tRNA.
 
     0.512
dpo1
DNA polymerase I; This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction.
 
     0.502
Saci_1585
Conserved Archaeal protein.
 
    0.475
Saci_2136
Transcriptional regulator AsnC family.
   
 
 0.469
Saci_1588
Transcriptional regulator.
   
 
 0.468
Saci_1514
Conserved Archaeal protein.
 
     0.452
Your Current Organism:
Sulfolobus acidocaldarius DSM 639
NCBI taxonomy Id: 330779
Other names: S. acidocaldarius DSM 639, Sulfolobus acidocaldarius ATCC 33909, Sulfolobus acidocaldarius NCIB 11770
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.