STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saci_1188Alkyldihydroxyacetonephosphate synthase. (453 aa)    
Predicted Functional Partners:
Saci_0207
FAD-binding domain protein; Potential glycolate oxidoreductase.
  
     0.741
etfB
Electron transfer flavoprotein; Could be both subunits.
 
 
 0.641
iunH
Inosine-uridine preferring nucleoside hydrolase.
  
    0.575
Saci_0315
Electron transfer flavoprotein; Looks like a hybrid protein, since it contains both the alpha and the beta domain.
 
 
 0.573
etfA
Electron transfer flavoprotein.
 
 
 0.562
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.533
Saci_0205
Conserved protein.
 
  
 0.470
Saci_0952
Molybdenum cofactor biosynthesis protein D/E; Fusion protein that seems to be a joining of subunit D and E (sp:Q9V2A7) (COG:Ta0895 and COG:AF2179).
       0.410
Saci_0247
D-isomer specific 2-hydroxyacid dehydrogenase; Catalytic domain and NAD binding domain; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 
 0.409
Your Current Organism:
Sulfolobus acidocaldarius DSM 639
NCBI taxonomy Id: 330779
Other names: S. acidocaldarius DSM 639, Sulfolobus acidocaldarius ATCC 33909, Sulfolobus acidocaldarius NCIB 11770
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