Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Saci_1616 | argG | Saci_1616 | Saci_1617 | Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream TA rich sequence was found. | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.576 |
Saci_1616 | argH | Saci_1616 | Saci_1618 | Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream TA rich sequence was found. | Argininosuccinate lyase. | 0.579 |
Saci_1616 | argX | Saci_1616 | Saci_1621 | Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream TA rich sequence was found. | Conserved ribosomal protein S6; Catalyzes the ATP-dependent formation of a covalent bond between the amino group of glutamate and the gamma-carboxyl group of the C-terminal glutamate residue in LysW. Belongs to the RimK family. LysX subfamily. | 0.569 |
Saci_1616 | carB | Saci_1616 | Saci_1620 | Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream TA rich sequence was found. | Carbamoyl-phosphate synthase L chain. | 0.578 |
Saci_1616 | pyrA | Saci_1616 | Saci_1619 | Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream TA rich sequence was found. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.572 |
Saci_1738 | argX | Saci_1738 | Saci_1621 | Aldehyde dehydrogenase. | Conserved ribosomal protein S6; Catalyzes the ATP-dependent formation of a covalent bond between the amino group of glutamate and the gamma-carboxyl group of the C-terminal glutamate residue in LysW. Belongs to the RimK family. LysX subfamily. | 0.467 |
argG | Saci_1616 | Saci_1617 | Saci_1616 | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream TA rich sequence was found. | 0.576 |
argG | argH | Saci_1617 | Saci_1618 | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Argininosuccinate lyase. | 0.999 |
argG | argX | Saci_1617 | Saci_1621 | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Conserved ribosomal protein S6; Catalyzes the ATP-dependent formation of a covalent bond between the amino group of glutamate and the gamma-carboxyl group of the C-terminal glutamate residue in LysW. Belongs to the RimK family. LysX subfamily. | 0.851 |
argG | aspB | Saci_1617 | Saci_1428 | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Aspartate aminotransferase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | 0.943 |
argG | carB | Saci_1617 | Saci_1620 | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Carbamoyl-phosphate synthase L chain. | 0.999 |
argG | gdhA | Saci_1617 | Saci_0155 | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.618 |
argG | lysZ | Saci_1617 | Saci_0751 | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Amino acid kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily. | 0.997 |
argG | pyrA | Saci_1617 | Saci_1619 | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.992 |
argH | Saci_1616 | Saci_1618 | Saci_1616 | Argininosuccinate lyase. | Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream TA rich sequence was found. | 0.579 |
argH | argG | Saci_1618 | Saci_1617 | Argininosuccinate lyase. | Arginosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.999 |
argH | argX | Saci_1618 | Saci_1621 | Argininosuccinate lyase. | Conserved ribosomal protein S6; Catalyzes the ATP-dependent formation of a covalent bond between the amino group of glutamate and the gamma-carboxyl group of the C-terminal glutamate residue in LysW. Belongs to the RimK family. LysX subfamily. | 0.861 |
argH | carB | Saci_1618 | Saci_1620 | Argininosuccinate lyase. | Carbamoyl-phosphate synthase L chain. | 0.974 |
argH | lysZ | Saci_1618 | Saci_0751 | Argininosuccinate lyase. | Amino acid kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily. | 0.997 |
argH | pyrA | Saci_1618 | Saci_1619 | Argininosuccinate lyase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.950 |
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