STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Saci_1663Conserved Archaeal protein; Also found in Aquifex aeolicus, Thermoanaerobacter tengcongensis and Thermotoga maritima. (201 aa)    
Predicted Functional Partners:
Saci_0049
Conserved protein.
       0.797
rps5
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 0.678
Saci_1644
NADH:ubiquinone oxidoreductase, B subunit; Belongs to the complex I 20 kDa subunit family.
   
 0.645
Saci_2345
NADH dehydrogenase I chain C.
   
 0.635
rps6e
30S ribosomal protein S6E; Full length match to SSO0411 but only N-terminal match to the sequences in COG2125; Belongs to the eukaryotic ribosomal protein eS6 family.
 
  0.623
Saci_1734
Phytoene synthase.
   
 0.623
Saci_2344
NADH-ubiquinone oxidoreductase.
    
 0.621
Saci_1090
ATP-dependent helicase; Belongs to the DEAD box helicase family.
  
 0.597
flpA
Fribrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
  
 0.597
rpl7ae
50S ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 0.596
Your Current Organism:
Sulfolobus acidocaldarius DSM 639
NCBI taxonomy Id: 330779
Other names: S. acidocaldarius DSM 639, Sulfolobus acidocaldarius ATCC 33909, Sulfolobus acidocaldarius NCIB 11770
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