Saci_1900 protein (Sulfolobus acidocaldarius DSM 639)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Saci_1900

Conserved protein. (236 aa)

Predicted Functional Partners:

Saci_1664

0.844

Saci_0995

0.478

Saci_1860

0.433

Saci_2090

0.433

Saci_2261

0.433

gds

0.401

Your Current Organism:

Sulfolobus acidocaldarius DSM 639

NCBI taxonomy Id: 330779
Other names: S. acidocaldarius DSM 639, Sulfolobus acidocaldarius ATCC 33909, Sulfolobus acidocaldarius NCIB 11770

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Saci_0995	Saci_1900	Saci_0995	Saci_1900	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	Conserved protein.	0.478
Saci_0995	gds	Saci_0995	Saci_0092	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	Geranylgeranyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl pyrophosphate with the allylic pyrophosphates to yield geranylgeranyl diphosphate (GGPP) which is a precursor of the ether-linked lipids. It is able to use dimethylallyl diphosphate (DMAPP), geranyl diphosphate (GPP), and (all- E)-geranyl diphosphate (E-FPP) as an allylic substrate.	0.918
Saci_1664	Saci_1900	Saci_1664	Saci_1900	Universally conserved protein.	Conserved protein.	0.844
Saci_1860	Saci_1900	Saci_1860	Saci_1900	Conserved Archaeal protein.	Conserved protein.	0.433
Saci_1900	Saci_0995	Saci_1900	Saci_0995	Conserved protein.	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	0.478
Saci_1900	Saci_1664	Saci_1900	Saci_1664	Conserved protein.	Universally conserved protein.	0.844
Saci_1900	Saci_1860	Saci_1900	Saci_1860	Conserved protein.	Conserved Archaeal protein.	0.433
Saci_1900	Saci_2090	Saci_1900	Saci_2090	Conserved protein.	Conserved Archaeal protein.	0.433
Saci_1900	Saci_2261	Saci_1900	Saci_2261	Conserved protein.	Conserved Archaeal Rieske domain protein.	0.433
Saci_1900	gds	Saci_1900	Saci_0092	Conserved protein.	Geranylgeranyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl pyrophosphate with the allylic pyrophosphates to yield geranylgeranyl diphosphate (GGPP) which is a precursor of the ether-linked lipids. It is able to use dimethylallyl diphosphate (DMAPP), geranyl diphosphate (GPP), and (all- E)-geranyl diphosphate (E-FPP) as an allylic substrate.	0.401
Saci_2090	Saci_1900	Saci_2090	Saci_1900	Conserved Archaeal protein.	Conserved protein.	0.433
Saci_2261	Saci_1900	Saci_2261	Saci_1900	Conserved Archaeal Rieske domain protein.	Conserved protein.	0.433
gds	Saci_0995	Saci_0092	Saci_0995	Geranylgeranyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl pyrophosphate with the allylic pyrophosphates to yield geranylgeranyl diphosphate (GGPP) which is a precursor of the ether-linked lipids. It is able to use dimethylallyl diphosphate (DMAPP), geranyl diphosphate (GPP), and (all- E)-geranyl diphosphate (E-FPP) as an allylic substrate.	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	0.918
gds	Saci_1900	Saci_0092	Saci_1900	Geranylgeranyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl pyrophosphate with the allylic pyrophosphates to yield geranylgeranyl diphosphate (GGPP) which is a precursor of the ether-linked lipids. It is able to use dimethylallyl diphosphate (DMAPP), geranyl diphosphate (GPP), and (all- E)-geranyl diphosphate (E-FPP) as an allylic substrate.	Conserved protein.	0.401