STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPECTOR_50g598Uncharacterized protein. (526 aa)    
Predicted Functional Partners:
GPECTOR_45g137
Uncharacterized protein.
    
   0.793
GPECTOR_28g785
TGc domain-containing protein.
    
 0.595
GPECTOR_21g690
Uncharacterized protein.
    
 0.564
A0A150FZG0
Uncharacterized protein.
    
  0.538
GPECTOR_4g583
Sm domain-containing protein.
    
 0.493
GPECTOR_87g407
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.489
GPECTOR_11g302
Sm domain-containing protein.
    
 0.484
GPECTOR_32g443
Uncharacterized protein.
  
     0.478
GPECTOR_13g720
Small nuclear ribonucleoprotein G.
    
  0.466
GPECTOR_9g417
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
  0.465
Your Current Organism:
Gonium pectorale
NCBI taxonomy Id: 33097
Other names: G. pectorale, Gonium pectorale O.F.Mueller
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