STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mip-AMacrophage infectivity potentiator. (999 aa)    
Predicted Functional Partners:
recB
Exodeoxyribonuclease V beta chain.
 
 0.989
recD1
Exodeoxyribonuclease V alpha chain.
 
 0.934
yrrC
Uncharacterized protein yrrC; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
 
 0.814
CCB87899.1
Unknown protein.
       0.762
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
      
 0.615
mip-B
Peptidyl-prolyl cis-trans isomerase Mip.
       0.550
CCB87903.1
Unknown protein.
       0.550
CCB88956.1
UPF0301 protein pc1755; Belongs to the UPF0301 (AlgH) family.
  
     0.528
CCB87904.1
Hypothetical protein.
       0.459
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.