STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCB87930.1Hypothetical protein. (531 aa)    
Predicted Functional Partners:
CCB89081.1
seT domain protein.
  
 
 0.852
CCB89115.1
Hypothetical protein.
  
     0.738
CCB89312.1
Hypothetical protein.
  
 
 
 0.675
CCB88408.1
Hypothetical protein.
  
     0.614
CCB89023.1
Putative uncharacterized protein.
  
   
 0.600
CCB89082.1
Hypothetical protein.
  
 
 
 0.599
CCB88783.1
Ankyrin repeat protein, putative.
  
 
 
 0.595
CCB88404.1
Hypothetical protein.
  
 
 
 0.559
CCB88405.1
Hypothetical protein.
  
 
 
 0.558
CCB87929.1
Putative permease, major facilitator superfamily.
 
     0.546
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.