STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spaTSubtilin transport ATP-binding protein SpaT. (597 aa)    
Predicted Functional Partners:
CCB88105.1
Hypothetical protein.
 
     0.872
potA
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
   
0.845
CCB87882.1
Erythronolide synthase.
 
 0.793
CCB88106.1
Unknown protein.
       0.773
CCB89578.1
Putative uncharacterized protein.
  
 
 0.732
CCB88807.1
Hypothetical protein.
 
  
0.670
CCB88806.1
Hypothetical protein.
 
 
  
0.645
CCB89156.1
ABC transporter related.
 
 
  
0.610
gAE4
UDP-glucuronate 4-epimerase 4.
  
  
 0.603
CCB89157.1
ABC transporter ATP-binding protein.
 
 
  
0.598
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.