STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCB88145.1Putative cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (419 aa)    
Predicted Functional Partners:
ycf16
Putative ATP-dependent transporter ycf16.
  
 0.997
sufD
Putative sufD.
 
 0.997
sufB
UPF0051 protein slr0074.
 
 0.996
CCB88186.1
Putative iron-sulfur cluster assembly protein nifU.
  
 
 0.938
trxB
Thioredoxin reductase.
  
 
 0.905
sufE
Cysteine desulfuration protein sufE.
 
 
 0.771
smcL
Sphingomyelinase C.
    
   0.614
CCB88141.1
Unknown protein.
       0.572
CCB88146.1
Hypothetical protein.
       0.458
CCB87882.1
Erythronolide synthase.
   
  
 0.438
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.