STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaeLPutative zinc metalloprotease CT_072. (647 aa)    
Predicted Functional Partners:
omp85
Putative outer membrane protein Omp85.
 
  
 0.909
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
  
  
 0.884
CCB88391.1
Putative metal transport system membrane protein CT_069.
  
    0.836
CCB88388.1
Putative uncharacterized protein.
 
     0.826
secDF
Putative bifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
  
 0.809
CCB88389.1
Uncharacterized metal-binding lipoprotein TC_0338; Belongs to the bacterial solute-binding protein 9 family.
  
    0.785
mntB
Manganese transport system ATP-binding protein MntB.
       0.781
CCB88392.1
Putative metal transport system membrane protein CT_070.
       0.781
lepB-B
Putative signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.773
CCB89406.1
Hypothetical protein, putative type III secreted.
 
     0.758
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.