STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCB88858.1Uncharacterized transporter lpg1691. (460 aa)    
Predicted Functional Partners:
CCB89660.1
Uncharacterized transporter lpg1691.
  
  
 
0.906
rarA
Replication-associated recombination protein A.
   
   0.765
CCB88859.1
Putative uncharacterized protein.
  
   0.605
ybiT-A
Uncharacterized ABC transporter ATP-binding protein YbiT.
     
 0.434
CCB89036.1
Putative uncharacterized protein.
    
 0.431
CCB89034.1
Putative amino acid permease.
 
  
 0.428
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.