STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCB89279.1Uncharacterized protein slr1894; Belongs to the Dps family. (162 aa)    
Predicted Functional Partners:
pRDX1
Peroxiredoxin-1.
  
  
 0.719
hpf
Putative uncharacterized protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.632
CCB89280.1
Putative uncharacterized protein.
       0.537
CCB89034.1
Putative amino acid permease.
  
  
 0.510
CCB89282.1
Putative uncharacterized protein.
     
 0.472
CCB89281.1
Putative uncharacterized protein.
  
    0.471
CCB89283.1
Uncharacterized methyltransferase C1B3.06c.
       0.468
trxA
Thioredoxin; Belongs to the thioredoxin family.
   
  
 0.415
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.