Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CCB88794.1 | ada | SNE_A09170 | SNE_A16210 | Putative 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. | Regulatory protein ada. | 0.514 |
| CCB89034.1 | ada | SNE_A11570 | SNE_A16210 | Putative amino acid permease. | Regulatory protein ada. | 0.579 |
| CCB89034.1 | mGMT | SNE_A11570 | SNE_A19180 | Putative amino acid permease. | Putative methylated-DNA--protein-cysteine methyltransferase. | 0.502 |
| CCB89034.1 | rpoD | SNE_A11570 | SNE_A23480 | Putative amino acid permease. | rNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.471 |
| ada | CCB88794.1 | SNE_A16210 | SNE_A09170 | Regulatory protein ada. | Putative 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. | 0.514 |
| ada | CCB89034.1 | SNE_A16210 | SNE_A11570 | Regulatory protein ada. | Putative amino acid permease. | 0.579 |
| ada | cinA | SNE_A16210 | SNE_A03590 | Regulatory protein ada. | Putative competence-damage inducible protein; Belongs to the CinA family. | 0.676 |
| ada | lpxB | SNE_A16210 | SNE_A18470 | Regulatory protein ada. | lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.662 |
| ada | mGMT | SNE_A16210 | SNE_A19180 | Regulatory protein ada. | Putative methylated-DNA--protein-cysteine methyltransferase. | 0.547 |
| ada | polA | SNE_A16210 | SNE_A22200 | Regulatory protein ada. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.818 |
| ada | recA | SNE_A16210 | SNE_A00700 | Regulatory protein ada. | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.652 |
| ada | rpoD | SNE_A16210 | SNE_A23480 | Regulatory protein ada. | rNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.920 |
| ada | tag | SNE_A16210 | SNE_A16200 | Regulatory protein ada. | DNA-3-methyladenine glycosylase I. | 0.841 |
| ada | umuC | SNE_A16210 | SNE_A13180 | Regulatory protein ada. | Protein umuC. | 0.527 |
| cinA | ada | SNE_A03590 | SNE_A16210 | Putative competence-damage inducible protein; Belongs to the CinA family. | Regulatory protein ada. | 0.676 |
| cinA | lpxB | SNE_A03590 | SNE_A18470 | Putative competence-damage inducible protein; Belongs to the CinA family. | lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.718 |
| cinA | polA | SNE_A03590 | SNE_A22200 | Putative competence-damage inducible protein; Belongs to the CinA family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.653 |
| cinA | recA | SNE_A03590 | SNE_A00700 | Putative competence-damage inducible protein; Belongs to the CinA family. | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.865 |
| cinA | umuC | SNE_A03590 | SNE_A13180 | Putative competence-damage inducible protein; Belongs to the CinA family. | Protein umuC. | 0.418 |
| lpxB | ada | SNE_A18470 | SNE_A16210 | lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | Regulatory protein ada. | 0.662 |
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