STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCB89545.1Putative uncharacterized protein. (493 aa)    
Predicted Functional Partners:
CCB89544.1
NAD-dependent epimerase/dehydratase.
  
  
 0.778
CCB89546.1
Radical SAM domain protein.
       0.773
rfbM
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.671
htrA
DO Serine protease; Belongs to the peptidase S1C family.
       0.605
CCB89543.1
Putative uncharacterized protein.
       0.605
pitrm1
Presequence protease, mitochondrial.
       0.530
CCB89541.1
Hypothetical protein.
       0.530
rfbD
O-antigen export system permease protein rfbD.
  
  
 0.513
rfbP
Undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.451
sctQ-B
Putative flagellar motor switch protein.
    
   0.420
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.