STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCB89546.1Radical SAM domain protein. (498 aa)    
Predicted Functional Partners:
CCB89544.1
NAD-dependent epimerase/dehydratase.
 
   
 0.944
CCB89545.1
Putative uncharacterized protein.
       0.773
CCB89548.1
Galactokinase/mevalonate kinase protein.
 
     0.717
htrA
DO Serine protease; Belongs to the peptidase S1C family.
  
    0.612
rfbH
Lipopolysaccharide biosynthesis protein rfbH; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.606
CCB89543.1
Putative uncharacterized protein.
       0.605
CCB89541.1
Hypothetical protein.
  
    0.538
pitrm1
Presequence protease, mitochondrial.
       0.530
hemN
Oxygen-independent coproporphyrinogen-III oxidase 1; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.474
CCB89089.1
Putative uncharacterized protein.
  
     0.465
Your Current Organism:
Simkania negevensis
NCBI taxonomy Id: 331113
Other names: S. negevensis Z, Simkania negevensis Z, Simkania negevensis str. Z, Simkania negevensis strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.