STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cft1Protein cft1; RNA-binding component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation- dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Involved in poly(A) site recognition. May be involved in coupling transcription termination and mRNA 3'-end formation (By similarity); Belongs to the CFT1 family. (1400 aa)    
Predicted Functional Partners:
NFIA_008560
Cleavage and polyadenylation specifity factor, 73 kDa subunit, putative.
   
 0.999
NFIA_021820
mRNA cleavage and polyadenylation specificity factor complex subunit, putative.
   
 0.999
NFIA_067580
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.999
NFIA_097150
DUF3453 domain-containing protein.
    
 0.999
NFIA_084020
WD repeat protein.
    
 0.999
NFIA_056460
Cleavage and polyadenylylation specificity factor subunit Fip1, putative.
   
 0.999
NFIA_024750
YT521-B-like splicing factor, putative.
   
 0.998
NFIA_083010
Retinoblastoma-binding protein.
    
 0.997
NFIA_010090
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 0.994
NFIA_074830
WD repeat protein.
    
 0.994
Your Current Organism:
Aspergillus fischeri
NCBI taxonomy Id: 331117
Other names: A. fischeri NRRL 181, Aspergillus fischeri NRRL 181, Neosartorya fischeri NRRL 181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.