STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFIA_078600Mitochondrial GTPase (YlqF), putative. (280 aa)    
Predicted Functional Partners:
mrpl4
54S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.961
NFIA_110150
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.937
NFIA_075470
Mitochondrial ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.933
NFIA_085880
50S ribosomal protein L13.
   
 
 0.928
NFIA_016200
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
    
   0.927
NFIA_073570
Mitochondrial ribosomal protein L43, putative.
    
   0.927
NFIA_018070
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.912
NFIA_058950
GTP binding protein (EngB), putative.
  
 
 0.912
NFIA_013590
50S ribosomal subunit protein L15.
    
   0.889
nop7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.874
Your Current Organism:
Aspergillus fischeri
NCBI taxonomy Id: 331117
Other names: A. fischeri NRRL 181, Aspergillus fischeri NRRL 181, Neosartorya fischeri NRRL 181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.