STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFIA_058670Ubiquitin C-terminal hydrolase Ubp8, putative; Belongs to the peptidase C19 family. (499 aa)    
Predicted Functional Partners:
NFIA_082490
SAGA complex component (Sgf73), putative.
    
 0.997
NFIA_012220
SAGA complex component (Sgf29), putative.
   
 0.995
NFIA_066260
Bromodomain protein.
    
 0.994
NFIA_039510
Histone acetylase complex subunit Paf400, putative; Belongs to the PI3/PI4-kinase family.
    
 0.988
NFIA_011440
SAGA-like transcriptional regulatory complex subunit Spt3, putative.
    
 0.981
NFIA_020150
Transcriptional regulator Ngg1, putative.
    
 0.980
NFIA_075790
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.980
NFIA_010820
Transcription initiation factor TFIID, 31kD subunit, putative.
    
 0.972
NFIA_021540
Transcription initiation factor TFIID subunit, putative.
   
 0.962
NFIA_071160
Transcription initiation factor TFIID subunit 12, putative.
    
 0.952
Your Current Organism:
Aspergillus fischeri
NCBI taxonomy Id: 331117
Other names: A. fischeri NRRL 181, Aspergillus fischeri NRRL 181, Neosartorya fischeri NRRL 181
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.