STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFIA_059210SWI/SNF family DNA-dependent ATPase Ris1, putative. (1276 aa)    
Predicted Functional Partners:
NFIA_014790
Ubiquitin-like modifier SUMO, putative.
    
 0.653
NFIA_092000
DNA repair protein (RadR), putative.
   
 0.626
NFIA_048680
Ubiquitin conjugating enzyme (UbcM), putative; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.615
NFIA_104170
Ubiquitin conjugating enzyme (MmsB), putative.
    
 0.593
NFIA_105360
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.561
NFIA_082900
Chromatin remodeling and histone acetyltransferase complexes subunit (Arp4) putative; Belongs to the actin family.
   
 0.557
NFIA_030440
Chromatin remodeling complex subunit (Arp5), putative; Belongs to the actin family.
    
 0.530
NFIA_019820
Vezatin domain-containing protein.
  
 0.524
NFIA_019830
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.524
NFIA_030420
YL1_C domain-containing protein.
    
 0.490
Your Current Organism:
Aspergillus fischeri
NCBI taxonomy Id: 331117
Other names: A. fischeri NRRL 181, Aspergillus fischeri NRRL 181, Neosartorya fischeri NRRL 181
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