STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_32836Peptidylprolyl isomerase. (604 aa)    
Predicted Functional Partners:
CQW23_20440
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
   0.678
CQW23_11951
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.633
CQW23_17053
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.615
CQW23_32160
Nucleolar protein 56.
   
  0.613
CQW23_24408
Ribosome production factor 2-like protein.
   
   0.584
CQW23_01198
Ribosome production factor 2-like protein.
   
   0.584
CQW23_28334
Nop domain-containing protein.
   
   0.559
CQW23_22537
Nucleolar protein 58.
   
   0.559
CQW23_13171
Putative nucleolar protein 5-3.
   
   0.559
CQW23_11074
Bms1-type G domain-containing protein.
   
    0.551
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
Server load: low (26%) [HD]