STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_31152Uncharacterized protein. (213 aa)    
Predicted Functional Partners:
CQW23_25984
Uncharacterized protein.
   
 
 0.680
CQW23_19665
Uncharacterized protein.
    
 
 0.575
CQW23_05052
U1 small nuclear ribonucleoprotein 70 kDa.
    
 
 0.575
CQW23_08078
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
   0.559
CQW23_09932
E3 ubiquitin protein ligase.
   
 0.548
CQW23_31099
U2 small nuclear ribonucleoprotein A.
    
 
 0.537
CQW23_21874
Uncharacterized protein.
    
 
 0.534
CQW23_08856
Cell division cycle 5-like protein.
   
   0.531
CQW23_00817
SANT domain-containing protein.
   
   0.531
CQW23_00819
Uncharacterized protein.
   
   0.531
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.