STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_24896Cyclin-T1-4; Belongs to the cyclin family. (615 aa)    
Predicted Functional Partners:
CQW23_16428
Synaptobrevin-like protein YKT6; Belongs to the synaptobrevin family.
    
 0.943
CQW23_25531
t-SNARE coiled-coil homology domain-containing protein.
    
  0.942
CQW23_08562
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.871
CQW23_00065
Cyclin-dependent kinase D-1; Belongs to the protein kinase superfamily.
     
 0.865
CQW23_20159
Cyclin-H1-1; Belongs to the cyclin family.
     
 0.864
CQW23_23162
Nuclear cap-binding protein subunit 1.
   
 0.850
CQW23_33742
Putative serine/threonine-protein kinase.
    
 0.816
CQW23_30810
Putative serine/threonine-protein kinase.
    
 0.816
CQW23_28156
Putative serine/threonine-protein kinase; Belongs to the protein kinase superfamily.
    
 0.816
CQW23_28456
Cyclin-dependent kinase C-2.
    
 0.816
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
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