STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_21840Protein SPA1-RELATED 3. (876 aa)    
Predicted Functional Partners:
CQW23_00622
Uncharacterized protein.
    
 0.937
CQW23_29159
Ubiquitin-40S ribosomal protein S27a.
    
 0.897
CQW23_02185
Ubiquitin-40S ribosomal protein S27a.
    
 0.897
CQW23_19221
BZIP domain-containing protein.
    
 0.886
CQW23_23721
Uncharacterized protein.
    
 0.855
CQW23_19832
E3 ubiquitin-protein ligase KEG.
    
 0.855
CQW23_25475
Serine/threonine-protein kinase 4.
    
  0.835
CQW23_30267
TGACG-sequence-specific DNA-binding protein TGA-1B.
    
 0.810
CQW23_01131
BZIP transcription factor 17.
    
 0.810
CQW23_19809
Ubiquitin-60S ribosomal protein L40-2.
    
  0.804
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.