STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_22751Uncharacterized protein. (121 aa)    
Predicted Functional Partners:
CQW23_29159
Ubiquitin-40S ribosomal protein S27a.
    
  0.586
CQW23_02185
Ubiquitin-40S ribosomal protein S27a.
    
  0.586
CQW23_30285
AP-2 complex subunit alpha-1.
   
 0.581
CQW23_26889
AP-2 complex subunit alpha; Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome.
   
 0.581
CQW23_25002
MHD domain-containing protein.
    
 0.485
CQW23_11117
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.476
CQW23_14308
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.465
CQW23_12793
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.465
CQW23_06997
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.465
CQW23_07302
Uncharacterized protein.
    
 0.465
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
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