STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_16947DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily. (352 aa)    
Predicted Functional Partners:
CQW23_01640
DNA repair protein XRCC2-like protein.
   
 0.894
CQW23_22489
Meiotic recombination protein DMC1-like protein; Belongs to the RecA family.
  
0.880
CQW23_31711
Crossover junction endonuclease MUS81.
   
 0.878
CQW23_17586
DNA repair protein XRCC3-like protein.
  
 
0.870
CQW23_18364
3'-5' exonuclease domain-containing protein.
   
 0.869
CQW23_06341
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.869
CQW23_04623
Exonuclease 1.
  
 0.858
CQW23_03430
Tower domain-containing protein.
   
 0.854
CQW23_12412
DNA repair protein RAD51-like protein 3.
  
0.853
CQW23_15874
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.842
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
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