STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_12929tRNA pseudouridine synthase. (334 aa)    
Predicted Functional Partners:
CQW23_28210
Uncharacterized protein.
   
 
 0.806
CQW23_00077
GMP synthase [glutamine-hydrolyzing].
   
 
  0.804
CQW23_22772
Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
   
 
  0.774
CQW23_08926
FHA domain-containing protein.
   
 
  0.772
CQW23_00159
Uncharacterized protein.
  
   0.735
CQW23_16099
50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.732
CQW23_16098
50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.732
CQW23_01889
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.732
CQW23_10530
Uncharacterized protein.
   
 
 0.723
CQW23_11285
30S ribosomal protein S17, chloroplastic; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.695
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
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