STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_04010TLC domain-containing protein. (745 aa)    
Predicted Functional Partners:
CQW23_08651
c-Myc-binding protein.
    
 
 0.574
CQW23_28961
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.559
CQW23_06887
Uncharacterized protein.
    
 
 0.524
CQW23_04598
Multiple organellar RNA editing factor 5, mitochondrial.
    
 
 0.524
CQW23_20725
Uncharacterized protein.
      
 0.479
CQW23_17046
Uncharacterized protein.
      
 0.422
CQW23_10819
Uncharacterized protein.
      
 0.422
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
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