CQW23_04485 protein (Capsicum baccatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CQW23_04485

Cell division cycle protein 48-like protein; Belongs to the cyclin family. (674 aa)

Predicted Functional Partners:

CQW23_14195

0.900

CQW23_16473

0.896

CQW23_31765

0.893

CQW23_23917

0.879

CQW23_17136

0.860

CQW23_04831

0.860

CQW23_22500

0.859

CQW23_30092

0.857

CQW23_12323

0.857

CQW23_32505

0.850

Your Current Organism:

Capsicum baccatum

NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CQW23_04485	CQW23_04831	A0A2G2XEX3	A0A2G2XFS4	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	Plant UBX domain-containing protein 4.	0.860
CQW23_04485	CQW23_12323	A0A2G2XEX3	A0A2G2WS95	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.857
CQW23_04485	CQW23_14195	A0A2G2XEX3	A0A2G2WIG5	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	E3 ubiquitin protein ligase RIN2.	0.900
CQW23_04485	CQW23_16473	A0A2G2XEX3	A0A2G2WB14	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	Protein OS-9-like protein.	0.896
CQW23_04485	CQW23_17136	A0A2G2XEX3	A0A2G2WCY6	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	Plant UBX domain-containing protein 5.	0.860
CQW23_04485	CQW23_22500	A0A2G2XEX3	A0A2G2W113	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.859
CQW23_04485	CQW23_23917	A0A2G2XEX3	A0A2G2VTB2	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	Putative ataxin-3-like protein.	0.879
CQW23_04485	CQW23_30092	A0A2G2XEX3	A0A2G2VBE1	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.857
CQW23_04485	CQW23_31765	A0A2G2XEX3	A0A2G2V6K3	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	UBX domain-containing protein.	0.893
CQW23_04485	CQW23_32505	A0A2G2XEX3	A0A2G2V4M4	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	UBX domain-containing protein.	0.850
CQW23_04831	CQW23_04485	A0A2G2XFS4	A0A2G2XEX3	Plant UBX domain-containing protein 4.	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	0.860
CQW23_04831	CQW23_12323	A0A2G2XFS4	A0A2G2WS95	Plant UBX domain-containing protein 4.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.822
CQW23_04831	CQW23_17136	A0A2G2XFS4	A0A2G2WCY6	Plant UBX domain-containing protein 4.	Plant UBX domain-containing protein 5.	0.952
CQW23_04831	CQW23_30092	A0A2G2XFS4	A0A2G2VBE1	Plant UBX domain-containing protein 4.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.822
CQW23_04831	CQW23_31765	A0A2G2XFS4	A0A2G2V6K3	Plant UBX domain-containing protein 4.	UBX domain-containing protein.	0.975
CQW23_04831	CQW23_32505	A0A2G2XFS4	A0A2G2V4M4	Plant UBX domain-containing protein 4.	UBX domain-containing protein.	0.872
CQW23_12323	CQW23_04485	A0A2G2WS95	A0A2G2XEX3	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Cell division cycle protein 48-like protein; Belongs to the cyclin family.	0.857
CQW23_12323	CQW23_04831	A0A2G2WS95	A0A2G2XFS4	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Plant UBX domain-containing protein 4.	0.822
CQW23_12323	CQW23_14195	A0A2G2WS95	A0A2G2WIG5	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	E3 ubiquitin protein ligase RIN2.	0.983
CQW23_12323	CQW23_16473	A0A2G2WS95	A0A2G2WB14	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Protein OS-9-like protein.	0.983