STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_01425SH3 domain-containing protein. (370 aa)    
Predicted Functional Partners:
CQW23_04940
FYVE-type domain-containing protein.
  
 
 
 0.574
CQW23_04938
FYVE-type domain-containing protein.
  
 
 
 0.570
CQW23_35217
FYVE-type domain-containing protein.
  
 
 
 0.563
CQW23_11659
AMSH-like ubiquitin thioesterase 1.
    
 0.524
CQW23_22618
RING-type domain-containing protein.
    
 0.509
CQW23_01774
AMSH-like ubiquitin thioesterase 1.
    
 0.509
CQW23_06650
Charged multivesicular body protein 2a.
    
 
 0.496
CQW23_19778
Dynamin-related protein 1B; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 
 0.488
CQW23_12425
Dynamin-related protein 1A; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 
 0.488
CQW23_08522
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.473
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.