STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW23_01344DNA (Cytosine-5)-methyltransferase 1. (1006 aa)    
Predicted Functional Partners:
CQW23_31823
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.869
CQW23_15285
Putative trafficking protein particle complex subunit 2.
    
 0.867
CQW23_03106
Uncharacterized protein.
    
 0.864
CQW23_25309
S-adenosylmethionine decarboxylase proenzyme.
     
 0.861
CQW23_23122
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.837
CQW23_19836
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.837
CQW23_07690
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.828
CQW23_07692
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.828
CQW23_10390
Uncharacterized protein.
    
 0.806
CQW23_06238
Uncharacterized protein.
    
 0.806
Your Current Organism:
Capsicum baccatum
NCBI taxonomy Id: 33114
Other names: C. baccatum, Capsicum baccatum L.
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.