STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ychFGTP-binding protein YchF. (364 aa)    
Predicted Functional Partners:
G5S_0086
Peptidyl-tRNA hydrolase.
 
  
 0.795
guaA
GMP synthase.
  
  
 0.784
pheT
Phenylalanyl-tRNA synthetase beta chain.
  
  
 0.766
metG
methionyl-tRNA synthetase.
  
  
 0.763
prfA
Peptide chain release factor 1.
 
  
 0.754
argS
arginyl-tRNA synthetase.
  
  
 0.730
edd1
Glycyl-tRNA synthetase.
  
  
 0.697
rpsG
Ribosomal protein S7.
  
 
 0.662
G5S_1081
Ribose-phosphate pyrophosphokinase.
  
    0.652
G5S_0812
Type III secretion protein, HrcV family.
       0.503
Your Current Organism:
Chlamydia pecorum
NCBI taxonomy Id: 331635
Other names: C. pecorum E58, Chlamydia pecorum E58, Chlamydophila pecorum ATCC VR-628, Chlamydophila pecorum E58, Chlamydophila pecorum str. E58, Chlamydophila pecorum strain E58
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.