STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gidAGlucose-inhibited division protein A. (611 aa)    
Predicted Functional Partners:
trmE
tRNA modification GTPase TrmE.
 
 0.995
gatA
glutamyl-tRNA(Gln) amidotransferase, A subunit.
      
 0.867
fumC
Fumarate hydratase, class II.
      
 0.867
hemN
Oxygen-independent coproporphyrinogen III oxidase.
      
 0.848
G5O_0141
Lipoate-protein ligase A-related protein.
  
    0.847
tyrS
tyrosyl-tRNA synthetase.
      
 0.776
radA
DNA repair protein RadA.
      
 0.732
G5O_0124
50S ribosomal protein L6.
   
 
  0.724
G5O_0884
Aas bifunctional protein, putative.
  
 
  0.714
G5O_0885
Snglycerol-3-p acyltransferase.
  
 
  0.714
Your Current Organism:
Chlamydia psittaci 6BC
NCBI taxonomy Id: 331636
Other names: C. psittaci 6BC, Chlamydophila psittaci 6BC, Chlamydophila psittaci ATCC VR-125, Chlamydophila psittaci str. 6BC, Chlamydophila psittaci strain 6BC, Psittacosis strain 6 BC
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