STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G5O_0464RNA polymerase sigma factor, sigma-70 family. (257 aa)    
Predicted Functional Partners:
G5O_0463
Protein export protein, FHIPEP family.
 
  
 0.918
rpoC
DNA-directed RNA polymerase, beta' subunit.
    
 0.854
rpoB
DNA-directed RNA polymerase, beta subunit.
    
 0.850
rpoA
DNA-directed RNA polymerase, alpha subunit.
    
 0.848
G5O_0085
rsbW protein, putative.
  
 
 0.820
G5O_0956
Type III secretion cytoplasmic ATPase SctN.
 
 
 0.775
G5O_0048
Type III secretion translocase SctQ.
  
  
 0.768
G5O_0954
Secretory protein, YscJ/FliF family.
  
  
 0.740
G5O_0988
Type III secretion system protein BsaX.
  
  
 0.712
G5O_0045
Type III secretion cytoplasmic ATPase SctN.
 
 
 0.702
Your Current Organism:
Chlamydia psittaci 6BC
NCBI taxonomy Id: 331636
Other names: C. psittaci 6BC, Chlamydophila psittaci 6BC, Chlamydophila psittaci ATCC VR-125, Chlamydophila psittaci str. 6BC, Chlamydophila psittaci strain 6BC, Psittacosis strain 6 BC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.