Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
G5O_0020 | G5O_0148 | G5O_0020 | G5O_0148 | DNA-(Apurinic or apyrimidinic site) lyase. | DNA polymerase I. | 0.608 |
G5O_0020 | G5O_0977 | G5O_0020 | G5O_0977 | DNA-(Apurinic or apyrimidinic site) lyase. | Endonuclease III. | 0.670 |
G5O_0020 | ung | G5O_0020 | G5O_1036 | DNA-(Apurinic or apyrimidinic site) lyase. | uracil-DNA glycosylase. | 0.519 |
G5O_0148 | G5O_0020 | G5O_0148 | G5O_0020 | DNA polymerase I. | DNA-(Apurinic or apyrimidinic site) lyase. | 0.608 |
G5O_0148 | G5O_0153 | G5O_0148 | G5O_0153 | DNA polymerase I. | Orotate phosphoribosyltransferase. | 0.548 |
G5O_0148 | G5O_0378 | G5O_0148 | G5O_0378 | DNA polymerase I. | Deoxyuridine 5triphosphate nucleotidohydrolase. | 0.514 |
G5O_0148 | G5O_0977 | G5O_0148 | G5O_0977 | DNA polymerase I. | Endonuclease III. | 0.769 |
G5O_0148 | G5O_1037 | G5O_0148 | G5O_1037 | DNA polymerase I. | ATP-dependent helicase PcrA. | 0.816 |
G5O_0148 | dnaN | G5O_0148 | G5O_0481 | DNA polymerase I. | DNA polymerase III, beta subunit. | 0.988 |
G5O_0148 | ung | G5O_0148 | G5O_1036 | DNA polymerase I. | uracil-DNA glycosylase. | 0.531 |
G5O_0153 | G5O_0148 | G5O_0153 | G5O_0148 | Orotate phosphoribosyltransferase. | DNA polymerase I. | 0.548 |
G5O_0153 | ung | G5O_0153 | G5O_1036 | Orotate phosphoribosyltransferase. | uracil-DNA glycosylase. | 0.422 |
G5O_0378 | G5O_0148 | G5O_0378 | G5O_0148 | Deoxyuridine 5triphosphate nucleotidohydrolase. | DNA polymerase I. | 0.514 |
G5O_0378 | dnaN | G5O_0378 | G5O_0481 | Deoxyuridine 5triphosphate nucleotidohydrolase. | DNA polymerase III, beta subunit. | 0.771 |
G5O_0378 | ung | G5O_0378 | G5O_1036 | Deoxyuridine 5triphosphate nucleotidohydrolase. | uracil-DNA glycosylase. | 0.418 |
G5O_0977 | G5O_0020 | G5O_0977 | G5O_0020 | Endonuclease III. | DNA-(Apurinic or apyrimidinic site) lyase. | 0.670 |
G5O_0977 | G5O_0148 | G5O_0977 | G5O_0148 | Endonuclease III. | DNA polymerase I. | 0.769 |
G5O_0977 | ung | G5O_0977 | G5O_1036 | Endonuclease III. | uracil-DNA glycosylase. | 0.721 |
G5O_1035 | G5O_1037 | G5O_1035 | G5O_1037 | Conserved hypothetical protein. | ATP-dependent helicase PcrA. | 0.646 |
G5O_1035 | rpoN | G5O_1035 | G5O_1038 | Conserved hypothetical protein. | RNA polymerase sigma-54 factor. | 0.646 |
page 1 of 3