STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARN78886.1Toxin HipA; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)    
Predicted Functional Partners:
ARN78885.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.970
ARN76867.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.807
ARN77641.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.807
ARN78887.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.664
ARN78888.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.664
ARN77595.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.577
ARN78884.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.559
ARN78453.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.546
ARN76766.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.414
ARN77497.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.414
Your Current Organism:
Nonlabens spongiae
NCBI taxonomy Id: 331648
Other names: JCM 13191, N. spongiae, NRRL B-41138, Nonlabens spongiae (Lau et al. 2006) Yi and Chun 2012, Stenothermobacter spongiae, Stenothermobacter spongiae Lau et al. 2006, strain UST030701-156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.