B0A49_12706 protein (Cryomyces minteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A49_12706

Uncharacterized protein. (134 aa)

Predicted Functional Partners:

B0A49_07161

0.830

B0A49_07642

0.802

B0A49_05385

0.794

B0A49_07129

0.759

B0A49_07921

0.755

B0A49_08791

0.746

B0A49_08672

0.745

B0A49_01708

0.740

B0A49_11252

0.732

B0A49_01165

0.729

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_01165	B0A49_01708	A0A4U0XDA9	A0A4U0WFN0	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
B0A49_01165	B0A49_05385	A0A4U0XDA9	A0A4V5NFA9	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.804
B0A49_01165	B0A49_07129	A0A4U0XDA9	A0A4U0X134	RNA_pol_L_2 domain-containing protein.	RPOL4c domain-containing protein.	0.997
B0A49_01165	B0A49_07642	A0A4U0XDA9	A0A4U0WYQ2	RNA_pol_L_2 domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.846
B0A49_01165	B0A49_08672	A0A4U0XDA9	A0A4U0X2J8	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.998
B0A49_01165	B0A49_08791	A0A4U0XDA9	A0A4V6WKS4	RNA_pol_L_2 domain-containing protein.	RRM domain-containing protein.	0.792
B0A49_01165	B0A49_11252	A0A4U0XDA9	A0A4U0VKZ6	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.997
B0A49_01165	B0A49_12706	A0A4U0XDA9	A0A4U0VKJ5	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.729
B0A49_01708	B0A49_01165	A0A4U0WFN0	A0A4U0XDA9	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RNA_pol_L_2 domain-containing protein.	0.998
B0A49_01708	B0A49_05385	A0A4U0WFN0	A0A4V5NFA9	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.813
B0A49_01708	B0A49_07129	A0A4U0WFN0	A0A4U0X134	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOL4c domain-containing protein.	0.997
B0A49_01708	B0A49_07642	A0A4U0WFN0	A0A4U0WYQ2	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Nuclear cap-binding protein subunit 2.	0.863
B0A49_01708	B0A49_08672	A0A4U0WFN0	A0A4U0X2J8	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.997
B0A49_01708	B0A49_08791	A0A4U0WFN0	A0A4V6WKS4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RRM domain-containing protein.	0.786
B0A49_01708	B0A49_11252	A0A4U0WFN0	A0A4U0VKZ6	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOLD domain-containing protein.	0.998
B0A49_01708	B0A49_12706	A0A4U0WFN0	A0A4U0VKJ5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.740
B0A49_05385	B0A49_01165	A0A4V5NFA9	A0A4U0XDA9	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.804
B0A49_05385	B0A49_01708	A0A4V5NFA9	A0A4U0WFN0	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.813
B0A49_05385	B0A49_07129	A0A4V5NFA9	A0A4U0X134	Uncharacterized protein.	RPOL4c domain-containing protein.	0.807
B0A49_05385	B0A49_07161	A0A4V5NFA9	A0A4U0WTV7	Uncharacterized protein.	RRM domain-containing protein.	0.746